MIT Libraries News

Using citation management software to create and maintain a collection of references is becoming more common and important in today’s academic world. These software packages allow users to search databases, retrieve relevant citations, and build a bibliography to be added to a paper or thesis or stored for future reference. But which software package should you use, and how do you get started?

This session will focus on EndNote, RefWorks, and Zotero, the three major options for bibliographic software at MIT. We will include a discussion comparing and contrasting the three softwares, and we will introduce some of the basic concepts and functionality of each program.

WHEN: Monday, January 11, 5 – 6pm & Thursday, January 28, 12 – 1pm

WHERE: DIRC, 14N-132

Enrollment is on a first-come, first-served basis. 20 computers are available; you are welcome to bring a laptop.

Contact Mathew Willmott with any questions.

Check out the MIT Libraries’ full schedule of IAP sessions.

This session is co-sponsored by the Electrical Engineering and Computer Science department.

Learn how to use the BIOBASE Knowledge Library (BKL) and Human Gene Mutation Database (HGMD) bioinformatics tools licensed by MIT Libraries. Interested in systems biology, biomarkers, drug target discovery, and high-throughput data analysis? Learn to use HGMD, a comprehensive database on human germ-line mutations associated with disease, to determine whether a newly identified gene lesion is novel, search for an overview of known mutations within a given gene, or search for a particular type of gene mutation within a specific chromosomal location.

WHEN: Monday, January 11, 2 – 5pm

WHERE: DIRC, 14N-132

Enrollment is on a first-come, first-served basis.

Contact Courtney Crummett with any questions.

Check out the MIT Libraries’ full schedule of IAP sessions.

This session is co-sponsored by the Electrical Engineering and Computer Science department.

Information on energy is everywhere! How do you find the scientific and technical information you need and keep on the cutting edge of what is published? Attend this hands-on session to find out.

WHEN: Monday, January 11, 12 – 1pm

WHERE: DIRC, 14N-132

Enrollment is on a first-come, first-served basis and is limited to 25 participants.

Contact Angie Locknar with any questions.

Check out the MIT Libraries’ full schedule of IAP sessions and MITEI’s Energy Futures Week activities.

This session is co-sponsored by the MIT Energy Initiative.

Looking for an alternative to Powerpoint for presenting images? The Offline Image Viewer (OIV), developed by ARTstor, is an alternative tool for giving offline classroom presentations. OIV allows users to download much larger images from ARTstor or import local images, at up to 3200 pixels on the long side. There is public access to this software. Users may combine ARTstor images with their own content to create digital slide show presentations that feature side-by-side comparisons, zooming and panning, and the ability to customize text on the slides. ARTstor’s Offline Image Viewer (OIV) enables instructors to give reliable classroom presentations using both high-resolution ARTstor images and local content without being connected to the Internet.

WHEN: Wednesday, January 6, 12:30 – 1:30pm

WHERE: DIRC, 14N-132

Contact Jolene de Verges with any questions.

Check out the MIT Libraries’ full schedule of IAP sessions.

This session is co-sponsored by the Office of Educational Innovation and Technology.

The National Center for Biotechnology Information (NCBI) Entrez family of databases is the foundation of knowledge for molecular level bioscience research. Class attendees will learn about the organization of key NCBI databases, understand the database record structure, and work with the BLAST search tool.

The session is a hands-on practicum and an excellent starting point for people who are new to, or curious about bioinformatics research tools.

WHEN: Wednesday, January 6, 11am – 12pm & Tuesday, January 12, 3 – 4pm

WHERE: DIRC, 14N-132

Enrollment is on a first-come, first-served basis and is limited to 20 participants.

Contact Erja Kajosalo with any questions.

Check out the MIT Libraries’ full schedule of IAP sessions.

This session is co-sponsored by the Electrical Engineering and Computer Science department.

If you are a researcher in chemistry, or chemistry related subjects like chemical engineering, materials science, environmental science, biological sciences, etc., then you should know about SciFinder, the most comprehensive chemical information database.

This hands-on workshop will teach you the basics of SciFinder on the web!

WHEN: Tuesday, January 5, 4 – 5pm

WHERE: DIRC, 14N-132

Enrollment is on a first-come, first-served basis and is limited to 20 participants.

Contact Erja Kajosalo with any questions.

Check out the MIT Libraries’ full schedule of IAP sessions.

Are you wondering what an RSS feed is and how it can help your research?

Want to learn more about using GIS, EndNote or RefWorks?

Need to find chemical information, social science data, or patents?

Want to kick back and enjoy a film festival, improve your bioinformatics search skills, or learn how to make your own videos for the Web?

Look no further! Take a peek at all of the MIT Libraries IAP Activities offered in 2010.

Looking to gain skills in working with statistical analysis software packages?  The following classes will be taught by the Harvard-MIT Data Center (HMDC) Statistical Consultant and start next week!  Note: there will be time at the end of each session for individual assistance, so feel free to bring your research questions.

1. Introduction to Stata
Get an introduction to Stata, the statistical analysis software package commonly used at MIT. With hands-on exercises, learn how to import and manage datasets. Novices welcome!

When: Friday, October 23rd, 2-5pm

2. Data Management in Stata
Learn techniques for data management using Stata. Perform hands-on exercises and learn how to create cross-sectional, time-series, and panel datasets from several data files.  Topics include importing data into Stata, labeling data and variables, converting data from string to numeric format, appending and merging datasets, and collapsing and reshaping a dataset.  Prerequisite: a general familiarity with Stata (such as taking the Intro. workshop).

When: Friday, November 6th, 3-5pm

3. Introduction to Regression Using Stata
This hands-on class will provide a comprehensive introduction to estimating the linear regression model using ordinary least squares in Stata. Topics for the class include multiple regression, dummy variables, interaction effects, hypothesis tests, and model diagnostics. Prerequisites include a general familiarity with Stata (such as taking the Intro. workshop), the linear regression model, and the ordinary least squares estimation.

When: Friday, November 13th, 3-5pm

4. Introduction to R
Get an introduction to R, the open-source system for statistical computation and graphics available on Athena. With hands-on exercises, learn how to import and manage datasets, create R objects, and generate figures. Novices welcome!

When: Friday, December 11th, 1-4pm

Where: All workshops held in the Sloan Trading Room in the basement of E52: E52-010.

Space is limited. To register, contact: Katherine McNeill, mcneillh@mit.edu.

Can’t make these times? Attend these workshops at Harvard or view the slides on your own.

Brought to you by Social Science Data Services: http://libraries.mit.edu/guides/subjects/data/

Learn how to manage your articles and cite your references more effectively in these hands-on workshops. No advance registration required.

All workshops will take place in the Digital Instruction Resource Center (DIRC), 14N-132.

EndNote Basics

EndNote is a “personal bibliographic software” package that allows you to create and manage a database of bibliographic references.

Attendees will create a personal database of cited literature by importing references from resources such as Barton, Web of Science, PubMed, & other sources of published literature. Your database can be used to automatically generate in-text citations and bibliographies in your manuscripts. It can also help you organize and manage your PDF files.

• Friday, 10/16: 12-1pm
• Tuesday, 10/20: 5-6pm

RefWorks Basics

RefWorks is a web-based resource designed to help you organize references and create a bibliography. RefWorks allows you to search, retrieve relevant citations, easily cite references as you write your paper, and build your bibliography. It allows users to create individual or group accounts.

• Thursday, 10/15: 5-6pm
• Wednesday, 10/21: 12-1pm

Managing Your References: Overview of EndNote, RefWorks, and Zotero

Using citation management software to create and maintain a collection of references is becoming more common and important in today’s academic world. These software packages allow users to search databases, retrieve relevant citations, and build a bibliography to be added to a paper or thesis or stored for future reference. But which software package should you use, and how do you get started?

This session will focus on EndNote, RefWorks, and Zotero, the three major options for citation software at MIT. We will include a discussion comparing and contrasting the three softwares, and we will introduce some of the basic concepts and functionality of each program.

• Wednesday, 10/14: 5-6pm
• Thursday, 10/22: 12-1pm

Can’t make the classes and need help?  Try our research guides for citation software help, or ask us!

Learn about ICPSR (Inter-university Consortium for Political and Social Research), the world’s largest archive of research data for the social sciences.  Next week (Oct 5-9, 2009), ICPSR will be broadcasting live free webinars to help you understand and utilize its many data resources.  Topics covered include:

• Data on minority populations
• Graphing quantitative data & Web 2.0 tools for visualization
• Protecting respondent confidentiality
• American Community Survey
• American National Election Survey
• Harmonized data sets
• Documentation of research data
• Quantitative literacy/Using data in teaching
• Online analysis of data
• And more!

Visit http://www.icpsr.umich.edu/icpsrweb/ICPSR/or/ormeet/program/index.jsp to review the abstracts and slides and to register to attend the webinars.  Note: while these are presented in the context of the meeting of ICPSR Official Representatives, the webinars are free and open to the public; all members of the MIT community are encouraged to register and attend.

Can’t make the live webinars?  View them anytime at: http://www.icpsr.umich.edu/icpsrweb/ICPSR/or/ormeet/program/index.jsp.

For more information about ICPSR, contact MIT’s Official Representative, Katherine McNeill, at mcneillh@mit.edu.

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Monday, July 6 and Monday, July 20, 12pm – 1pm

Find out where Aero/Astro materials are now located. This session will highlight the various Aero/Astro collections and how to access them.

Contact Barbara Williams with any questions.

Full schedule of JulyAP 2009 workshops

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Friday, July 10, 12pm – 1pm

Endnote is a “personal bibliographic software” package which allows you to create and manage a database of bibliographic references. Learn how to find and use information more effectively in our hands-on workshops.

Contact Peter Cohn with any questions.

Full schedule of JulyAP 2009 workshops

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Thursday, July 9, 1pm – 2pm

Learn about the organization of key NCBI databases, understand the database record structure, and work with the BLAST search tool.

Contact Howard Silver with any questions.

Full schedule of JulyAP 2009 workshops

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Wednesday, July 8, 9am – 12pm

Learn how to use this gene expression tool licensed by MIT Libraries. Bring data!

Contact Courtney Crummett with any questions.

Full schedule of JulyAP 2009 workshops

Learn how to find and use information more effectively in these hands-on workshops. No advanced registration required. Light refreshments will be served at each session.

All workshops will take place in the Digital Instruction Resource Center (DIRC), 14N-132.

GeneGo Training
Wednesday, July 8, 9am – 12pm
Learn how to use this gene expression tool licensed by MIT Libraries. Bring data!
Contact: Courtney Crummett

Bioinformatics for Beginners
Thursday, July 9, 1pm – 2pm
Learn about the organization of key NCBI databases, understand the database record structure, and work with the BLAST search tool.
Contact: Howard Silver

EndNote Basics
Friday, July 10, 12pm – 1pm
Endnote is a “personal bibliographic software” package which allows you to create and manage a database of bibliographic references. Learn how to find and use information more effectively in our hands-on workshops.
Contact: Peter Cohn

OAG as a Travel Planner Tool
Monday, July 13, 12pm – 1pm
OAG Travel Planner Pro is the premier customizable online tool for business and professional travelers who need to make and manage complex travel plans.
Contact: Barbara Williams

RefWorks Basics
Friday, July 17, 12pm – 1pm
RefWorks is a web-based resource designed to help you organize references and create a bibliography. RefWorks allows you to search, retrieve relevant citations, easily cite references as you write your paper, and build your bibliography. It allows users to create individual or group accounts.
Contact: Anita Perkins

Accessing the Aero/Astro Collection
Monday, July 6 and Monday, July 20, 12pm – 1pm
Find out where Aero/Astro materials are now located. This session will highlight the various Aero/Astro collections and how to access them.
This session is limited to 25 participants. To register, contact Barbara Williams.

Sequence Alignment
Wednesday, July 22, 10am – 12pm
Explore sequence alignment algorithms and their practical applications. Session will include a hands-on algorithm exercise and practical usage information (Clustal, BLAST, BLAT, Maq).
Contact: Charlie Whittaker

DSpace@MIT for Research Collections
Friday, July 24 and Monday, July 27, 12pm – 1pm
DSpace@MIT archives and makes globally discoverable the research output of MIT faculty, researchers, and students. The session will highlight MIT Libraries’ initiatives for easy upload of complete technical report and working papers series’ and will demonstrate how individuals and research groups can establish and begin populating new collections of research materials.
Contact: Craig Thomas

BLAST
Wednesday, July 29, 11am – 12pm
Learn how to use NCBI resources and optimize your BLAST protein searches to get the most out of your results. Attendance at Bioinformatics for Beginners and familiarity with BLAST are recommended.
Contact: Amy Stout

Data Management 101
Friday, July 31, 12pm – 1pm
For researchers struggling to manage their data, basic strategies will be provided for best practices for retention and archiving, effective directory structures and naming conventions, good file formats for long-term access, data security and backup options, metadata, tagging, and citation and other relevant issues.
Contact: Anne Graham

Sponsored by the MIT Libraries.

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Friday, May 1, 12 – 1pm

Market research abounds on the web, but usually with a hefty price tag. This session will familiarize participants with market research accessible to MIT students and faculty. We will cover types of resources available, how to navigate them, and some basic tips for using these resources.

Contact: Maggie Bartley

Check out the full listing of IAPril 2009 Libraries events!

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Thursday, April 23, 12 – 1pm

For researchers struggling to manage their data, basic strategies will be provided for
• best practices for retention and archiving
• effective directory structures and naming conventions
• good file formats for long-term access
• data security and backup options
• metadata, tagging, and citation
• other relevant issues

Contact: MacKenzie Smith

Check out the full listing of IAPril 2009 Libraries events!

Come and hear attorney Sonia Guterman of Lawson & Wetzen discuss the distinctive aspects of patents that make them valuable, the role of patents in capital development, along with issues surrounding filing biotech patents. She will be assisted by Drew Lowery, who received his Ph.D. in Biochemistry from MIT and is a member of Global Prior Art’s Life Science Team. Drew will discuss and demonstrate alternative ways to search biotech patent art and their suitability. At the end of the talk attendees will have the opportunity to do hands on searching.

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Thursday, April 16, 12 – 1:30pm

Contact Darcy Duke for more information.

Check out the full listing of IAPril 2009 Libraries events!

The MIT Libraries subscribe to a number of databases that you can use to research companies and industries. Using these databases, you can:

• Target companies by industry and geography
• Conduct comprehensive company and industry research

We will discuss why this type of research is critical to the job and internship search process, and how to use these databases effectively.

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Thursday, April 9, 3 – 4:30pm

Contact: Anita Perkins for more information.

Check out the full listing of IAPril 2009 Libraries events!

Learn how to find and use information more effectively in our hands-on workshops. No advanced registration required.

**NOTE that different events will be happening throughout the month of April and early May.**

WHERE: 14N-132 (Digital Instruction Resource Center – DIRC)

WHEN: Friday, April 10, 12 – 1pm

Class attendees will learn about the organization of key NCBI databases, understand the database record structure, and work with the BLAST search tool. The session is a hands-on practicum and an excellent starting point for people who are new to, or curious about bioinformatics research tools.

Contact Howard Silver for more information.

Check out the full listing of IAPril 2009 Libraries events!